AatrE1.2

The AatrE1.2 geneset contains updates to 1981 loci to alter the predicted start codon based on multiple sequence alignments of orthologs and updated version of MAKER.

Genes

Genes Protein-coding Other
14,230 13,776 454

Transcripts

Transcripts Protein-coding Other
14,230 13,776 454
Release date: 
24 Jun 2014

FAQ: More details on what these counts mean.

Assembly: 

AatrE1

This assembly was generated using 101 bp paired-end Illumina HiSeq2000 reads generated from three libraries: a 180 bp insert ‘fragment’ library, a 1.5 kb ‘jump’ library, and a 38 kb ‘fosill’ library. Sequencing template for the fragment and jump libraries was derived from genomic DNA extracted from a single individual, which was preserved by freezing at -80C. Native genomic DNA was used for the fragment library and whole genome amplified DNA was used for the jump library. Template for the fosill library was generated from a pooled extraction of many individuals.