Do you store mosquito transposon data?
Answer:
No, we don't store mosquito transposon data.
We mask the genome sequence before the annotation step, using the TEfam and GenBank transposon-related sequences.
In the genome browser you can visualize the masked regions but there is little details about the origin of the repeat/TE sequences.
Aedes only has an additional track showing the TEs from TEfam.
- Go to this location: supercont1.139:706001-906000
- Click on 'configure this page' on the left-hand side menu. This will open a new pop-up window
- Click on 'repeats' and select the 'TEfam' track
- Close the pop-up window on the top right-side
- The TEFam track should appear in the location view
