Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 201 - 225 of 718
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 File Organism Size Type Description
Anopheles-gambiae_EST-RAW_2012-12.fa.gz Anopheles gambiae 45.32 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-gambiae-Pimperena_BAC-ENDS_2012-12.fa.gz Anopheles gambiae 22.79 MB BAC ends Pimperena strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-gambiae-Pimperena_CONTIG2SCAFFOLD_AgamS1.agp.gz Anopheles gambiae 452.53 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles gambiae Pimperena strain, AgamS1 assembly.
Anopheles-gambiae-PEST_SCAFFOLD2CHROMOSOME_AgamP4.agp.gz Anopheles gambiae 182.13 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles gambiae PEST strain, AgamP4 assembly.
Anopheles-gambiae-PEST_MAPPINGS_AgamP4.4-AgamP4.5.txt Anopheles gambiae 31.85 KB ID Mapping Stable ID mapping between genesets AgamP4.4 and AgamP4.5 (RNA gene update)
Anopheles-gambiae-PEST_MODIFICATIONS_AgamP3.8-AgamP4.1-ncRNA.txt Anopheles gambiae 60.59 KB ID Mapping PEST strain gene prediction stable identifier mapping for ncRNAs from AgamP3.8 to AgamP4.1.
Anopheles-gambiae-PEST_REPEATS.lib Anopheles gambiae 8.69 MB RepeatMasker library RepeatMasker library file of repeats for Anopheles gambiae, PEST strain.
Anopheles-gambiae-PEST_REPEATFEATURES_AgamP4.gff3.gz Anopheles gambiae 6.1 MB Repeat features PEST strain AgamP4 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-Pimperena_REPEATFEATURES_AgamS1.gff3.gz Anopheles gambiae 6.76 MB Repeat features Pimperena strain AgamS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae_EXPR-STATS_VB-2019-06.txt.gz Anopheles gambiae 46.97 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-koliensis-AKwgs3_CONTIGS_JXXB01.fa.gz Anopheles koliensis 45.03 MB Contigs AKwgs3 isolate genome contig sequences, JXXB01 assembly.
Anopheles-maculatus-maculatus3_CONTIGS_AmacM1.fa.gz Anopheles maculatus 40.12 MB Contigs maculatus3 strain genomic contigs sequences, AmacM1 assembly.
Anopheles-maculatus-maculatus3_SCAFFOLDS_AmacM1.fa.gz Anopheles maculatus 40.43 MB Scaffolds maculatus3 strain genomic scaffolds sequences, AmacM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-maculatus-maculatus3_PEPTIDES_AmacM1.5.fa.gz Anopheles maculatus 3.58 MB Peptides maculatus3 strain peptide sequences, AmacM1.5 geneset.
Anopheles-maculatus-maculatus3_TRANSCRIPTS_AmacM1.5.fa.gz Anopheles maculatus 5.38 MB Transcripts maculatus3 strain transcript sequences, AmacM1.5 geneset.
Anopheles-maculatus-maculatus3_BASEFEATURES_AmacM1.5.gff3.gz Anopheles maculatus 2.75 MB Basefeatures maculatus3 strain AmacM1.5 geneset in GFF3 format.
Anopheles-maculatus-maculatus3_BASEFEATURES_AmacM1.5.gtf.gz Anopheles maculatus 1.36 MB Basefeatures maculatus3 strain AmacM1.5 geneset in GTF (v2.2) format.
Anopheles-maculatus-maculatus3_CONTIG2SCAFFOLD_AmacM1.agp.gz Anopheles maculatus 559.25 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles maculatus maculatus3 strain, AmacM1 assembly.
Anopheles-maculatus-b-maculatus3_MAPPINGS_AmacM1.3-AmacM1.4.txt Anopheles maculatus 5.56 KB ID Mapping Stable ID mapping between genesets AmacM1.3 and AmacM1.4 (RNA gene update)
Anopheles-maculatus-maculatus3_REPEATS.lib Anopheles maculatus 2.53 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles maculatus, maculatus3 strain.
Anopheles-maculatus-maculatus3_REPEATFEATURES_AmacM1.gff3.gz Anopheles maculatus 2.92 MB Repeat features maculatus3 strain AmacM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-melas-CM1001059_A_CONTIGS_AmelC2.fa.gz Anopheles melas 61.63 MB Contigs CM1001059_A strain genomic contigs sequences, AmelC2 assembly.
Anopheles-melas-CM1001059_A_SCAFFOLDS_AmelC2.fa.gz Anopheles melas 62.28 MB Scaffolds CM1001059_A strain genomic scaffolds sequences, AmelC2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-melas-CM1001059_A_PEPTIDES_AmelC2.6.fa.gz Anopheles melas 4.55 MB Peptides CM1001059_A strain peptide sequences, AmelC2.6 geneset.
Anopheles-melas-CM1001059_A_TRANSCRIPTS_AmelC2.6.fa.gz Anopheles melas 6.82 MB Transcripts CM1001059_A strain transcript sequences, AmelC2.6 geneset.

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