Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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 File Organism Size Type Description
Anopheles-darlingi-Coari_BASEFEATURES_AdarC3.8.gtf.gz Anopheles darlingi 1.33 MB Basefeatures Coari strain AdarC3.8 geneset in GTF (v2.2) format.
Anopheles-darlingi_EST-CLIPPED_2012-12.fa.gz Anopheles darlingi 881.54 KB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Anopheles-darlingi_EST-RAW_2012-12.fa.gz Anopheles darlingi 980.14 KB Raw Publicly submitted EST/cDNAs as of December 2012.
Anopheles-darlingi-Coari_CONTIG2SCAFFOLD_AdarC3.agp.gz Anopheles darlingi 99.17 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles darlingi Coari strain, AdarC3 assembly.
Anopheles-darlingi-Coari_MAPPINGS_AdarC3.3-AdarC3.4.txt Anopheles darlingi 5.9 KB ID Mapping Stable ID mapping between genesets AdarC3.3 and AdarC3.4 (RNA gene update)
Anopheles-darlingi-Coari_REPEATS.lib Anopheles darlingi 73.79 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles darlingi, Coari strain.
Anopheles-darlingi-Coari_REPEATFEATURES_AdarC3.gff3.gz Anopheles darlingi 2.36 MB Repeat features Coari strain AdarC3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-dirus-WRAIR2_CONTIGS_AdirW1.fa.gz Anopheles dirus 60.08 MB Contigs WRAIR2 strain genomic contig sequences, AdirW1 assembly.
Anopheles-dirus-WRAIR2_SCAFFOLDS_AdirW1.fa.gz Anopheles dirus 60.08 MB Scaffolds WRAIR2 strain genomic scaffold sequences, AdirW1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-dirus-WRAIR2_PEPTIDES_AdirW1.8.fa.gz Anopheles dirus 4.44 MB Peptides WRAIR2 strain peptide sequences, AdirW1.8 geneset.
Anopheles-dirus-WRAIR2_TRANSCRIPTS_AdirW1.8.fa.gz Anopheles dirus 8.05 MB Transcripts WRAIR2 strain transcript sequences, AdirW1.8 geneset.
Anopheles-dirus-WRAIR2_BASEFEATURES_AdirW1.8.gff3.gz Anopheles dirus 1.88 MB Basefeatures WRAIR2 strain AdirW1.8 geneset in GFF3 format.
Anopheles-dirus-WRAIR2_BASEFEATURES_AdirW1.8.gtf.gz Anopheles dirus 1.6 MB Basefeatures WRAIR2 strain AdirW1.8 geneset in GTF (v2.2) format.
Anopheles-dirus-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles dirus 1.94 MB Assembled transcriptome 41061 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-dirus-WRAIR2_CONTIG2SCAFFOLD_AdirW1.agp.gz Anopheles dirus 200.87 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles dirus A WRAIR2 strain, AdirW1 assembly.
Anopheles-dirus-WRAIR2_MAPPINGS_AdirW1.3-AdirW1.4.txt Anopheles dirus 11.25 KB ID Mapping Stable ID mapping between genesets AdirW1.3 and AdirW1.4 (RNA gene update)
Anopheles-dirus-WRAIR2_REPEATS.lib Anopheles dirus 222.71 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles dirus, WRAIR2 strain.
Anopheles-dirus-WRAIR2_REPEATFEATURES_AdirW1.gff3.gz Anopheles dirus 3.25 MB Repeat features WRAIR2 strain AdirW1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-epiroticus-Epiroticus2_CONTIGS_AepiE1.fa.gz Anopheles epiroticus 61.73 MB Contigs Epiroticus2 strain genomic contig sequences, AepiE1 assembly.
Anopheles-epiroticus-Epiroticus2_SCAFFOLDS_AepiE1.fa.gz Anopheles epiroticus 62.03 MB Scaffolds Epiroticus2 strain genomic scaffold sequences, AepiE1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-epiroticus-Epiroticus2_PEPTIDES_AepiE1.7.fa.gz Anopheles epiroticus 4.25 MB Peptides Epiroticus2 strain peptide sequences, AepiE1.7 geneset.
Anopheles-epiroticus-Epiroticus2_TRANSCRIPTS_AepiE1.7.fa.gz Anopheles epiroticus 6.54 MB Transcripts Epiroticus2 strain transcript sequences, AepiE1.7 geneset.
Anopheles-epiroticus-Epiroticus2_BASEFEATURES_AepiE1.7.gff3.gz Anopheles epiroticus 1.7 MB Basefeatures Epiroticus2 strain AepiE1.7 geneset in GFF3 format.
Anopheles-epiroticus-Epiroticus2_BASEFEATURES_AepiE1.7.gtf.gz Anopheles epiroticus 1.39 MB Basefeatures Epiroticus2 strain AepiE1.7 geneset in GTF (v2.2) format.
Anopheles-epiroticus-Epiroticus2_CONTIG2SCAFFOLD_AepiE1.agp.gz Anopheles epiroticus 171.85 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles epiroticus, AepiE1 assembly.

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