Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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 File Organism Size Type Description
Anopheles-coluzzii-Mali-NIH_BAC-ENDS_Dec12.fa.gz Anopheles coluzzii 45.63 MB BAC ends Mali-NIH strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-coluzzii-Mali-NIH_CONTIG2SCAFFOLD_AcolM1.agp.gz Anopheles coluzzii 544.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles coluzzii Mali-NIH strain, AcolM1.2 assembly.
Anopheles-coluzzii-Ngousso_SCAFFOLD2CHROMOSOME_AcolN1.agp.gz Anopheles coluzzii 1.89 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles coluzzii Ngousso strain, AcolN1 assembly.
Anopheles-coluzzii-Mali-NIH_MAPPINGS_AcolM1.3-AcolM1.4.txt Anopheles coluzzii 18.97 KB ID Mapping Stable ID mapping between genesets AcolM1.3 and AcolM1.4 (RNA gene update)
Anopheles-coluzzii-Mali-NIH_REPEATS.lib Anopheles coluzzii 495.2 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles coluzzii, MALI-NIH strain.
Anopheles-coluzzii-Ngousso_NONREFREPEATFEATURES_AcolN1.gff3.gz Anopheles coluzzii 3 MB Repeat features Ngousso strain AcolN1 repeat features (RepeatMasker, Dust, TRF) for non_ref_scaffolds in GFF3 format.
Anopheles-coluzzii-Ngousso_REPEATFEATURES_AcolN1.gff3.gz Anopheles coluzzii 8.94 MB Repeat features Ngousso strain AcolN1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii-Mali-NIH_REPEATFEATURES_AcolM1.gff3.gz Anopheles coluzzii 4.77 MB Repeat features Mali-NIH strain AcolM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii_EXPR-STATS_VB-2019-06.txt.gz Anopheles coluzzii 5.05 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-coluzzii-Ngousso_NONREFSCAFFOLDS_AcolN1.fa.gz Anopheles coluzzii 26.96 MB Ngousso strain genomic nonrefscaffolds sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-culicifacies-A-37_CONTIGS_AculA1.fa.gz Anopheles culicifacies A 56.31 MB Contigs A-37 strain genome contig sequences, AculA1 assembly.
Anopheles-culicifacies-A-37_SCAFFOLDS_AculA1.fa.gz Anopheles culicifacies A 56.71 MB Scaffolds A-37 strain genome scaffold sequences, AculA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-culicifacies-A-37_PEPTIDES_AculA1.6.fa.gz Anopheles culicifacies A 4.56 MB Peptides A-37 strain peptide sequences, AculA1.6 geneset.
Anopheles-culicifacies-A-37_TRANSCRIPTS_AculA1.6.fa.gz Anopheles culicifacies A 6.89 MB Transcripts A-37 strain transcript sequences, AculA1.6 geneset.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.6.gff3.gz Anopheles culicifacies A 2.35 MB Basefeatures A-37 strain AculA1.6 geneset in GFF3 format.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.6.gtf.gz Anopheles culicifacies A 1.65 MB Basefeatures A-37 strain AculA1.6 geneset in GTF (v2.2) format.
Anopheles-culicifacies-A-37_CONTIG2SCAFFOLD_AculA1.agp.gz Anopheles culicifacies A 359.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles culicifacies A-37 strain, AculA1 assembly.
Anopheles-culicifacies-A-37_MAPPINGS_AculA1.3-AculA1.4.txt Anopheles culicifacies A 13.73 KB ID Mapping Stable ID mapping between genesets AculA1.3 and AculA1.4 (RNA gene update)
Anopheles-culicifacies-A-37_REPEATS.lib Anopheles culicifacies A 4.48 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles culicifacies, A-37 strain.
Anopheles-culicifacies-A-37_REPEATFEATURES_AculA1.gff3.gz Anopheles culicifacies A 2.87 MB Repeat features A-37 strain AculA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-darlingi-Coari_CONTIGS_AdarC3.fa.gz Anopheles darlingi 41.53 MB Contigs Coari strain genomic contig sequences, AdarC3 assembly.
Anopheles-darlingi-Coari_SCAFFOLDS_AdarC3.fa.gz Anopheles darlingi 41.48 MB Scaffolds Coari strain genomic scaffold sequences, AdarC3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-darlingi-Coari_PEPTIDES_AdarC3.8.fa.gz Anopheles darlingi 3.86 MB Peptides Coari strain peptide sequences, AdarC3.8 geneset.
Anopheles-darlingi-Coari_TRANSCRIPTS_AdarC3.8.fa.gz Anopheles darlingi 5.88 MB Transcripts Coari strain transcript sequences, AdarC3.8 geneset.
Anopheles-darlingi-Coari_BASEFEATURES_AdarC3.8.gff3.gz Anopheles darlingi 1.75 MB Basefeatures Coari strain AdarC3.8 geneset in GFF3 format.

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