Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
 File Organism Size Type Description
Anopheles-albimanus-STECLA_MAPPINGS_AalbS2.1-AalbS2.2.txt Anopheles albimanus 7.67 KB ID Mapping Stable ID mapping between genesets AalbS2.1 and AalbS2.2 (RNA gene update)
Anopheles-albimanus-STECLA_REPEATS.lib Anopheles albimanus 150.18 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles albimanus, STECLA strain.
Anopheles-albimanus-STECLA_REPEATFEATURES_AalbS2.gff3.gz Anopheles albimanus 3.2 MB Repeat features STECLA strain AalbS2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-albimanus_EXPR-STATS_VB-2019-06.txt.gz Anopheles albimanus 814.17 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-aquasalis-NIAID_TSA_GAMD01.fa.gz Anopheles aquasalis 994.96 KB Assembled transcriptome TSA:GAMD00000000.1 from L3, L4 larvae and adult females.
Anopheles-aquasalis-NIAID_TSA-PEPTIDES_GAMD01.fa.gz Anopheles aquasalis 673.23 KB Assembled proteome TSA:GAMD00000000.1 from L3, L4 larvae and adult females, peptide sequences.
Anopheles-arabiensis-Dongola_CONTIGS_AaraD1.fa.gz Anopheles arabiensis 65.1 MB Contigs Dongola strain genomic contig sequences, AaraD1 assembly.
Anopheles-arabiensis-Dongola_SCAFFOLDS_AaraD1.fa.gz Anopheles arabiensis 65.25 MB Scaffolds Dongola strain genomic scaffold sequences, AaraD1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-arabiensis-Dongola_PEPTIDES_AaraD1.11.fa.gz Anopheles arabiensis 4.59 MB Peptides Dongola strain peptide sequences, AaraD1.11 geneset.
Anopheles-arabiensis-Dongola_TRANSCRIPTS_AaraD1.11.fa.gz Anopheles arabiensis 9.82 MB Transcripts Dongola strain transcript sequences, AaraD1.11 geneset.
Anopheles-arabiensis-Dongola_BASEFEATURES_AaraD1.11.gff3.gz Anopheles arabiensis 2.14 MB Basefeatures Dongola strain AaraD1.11 geneset in GFF3 format.
Anopheles-arabiensis-Dongola_BASEFEATURES_AaraD1.11.gtf.gz Anopheles arabiensis 1.78 MB Basefeatures Dongola strain AaraD1.11 geneset in GTF (v2.2) format.
Anopheles-arabiensis-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles arabiensis 3.04 MB Assembled transcriptome 72049 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-arabiensis-Dongola_CONTIG2SCAFFOLD_AaraD1.agp.gz Anopheles arabiensis 258.12 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Anopheles arabiensis Dongola strain, AaraD1 assembly.
Anopheles-arabiensis-Dongola_MAPPINGS_AaraD1.4-AaraD1.5.txt Anopheles arabiensis 10.82 KB ID Mapping Stable ID mapping between genesets AaraD1.4 and AaraD1.5 (RNA gene update)
Anopheles-arabiensis-Dongola_REPEATS.lib Anopheles arabiensis 323.53 KB RepeatMasker library RepeatMasker library file of repeats for Anopheles arabiensis, Dongola strain.
Anopheles-arabiensis-Dongola_REPEATFEATURES_AaraD1.gff3.gz Anopheles arabiensis 4.73 MB Repeat features Dongola strain AaraD1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-arabiensis_EXPR-STATS_VB-2019-06.txt.gz Anopheles arabiensis 780.93 KB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-atroparvus-EBRO_CHROMOSOMES_AatrE3.fa.gz Anopheles atroparvus 57.24 MB Chromosomes EBRO strain genomic chromosomes sequences, AatrE3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-atroparvus-EBRO_SCAFFOLDS_AatrE3.fa.gz Anopheles atroparvus 57.24 MB Scaffolds EBRO strain genomic scaffolds sequences, AatrE3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-atroparvus-EBRO_PEPTIDES_AatrE3.1.fa.gz Anopheles atroparvus 4.61 MB Peptides EBRO strain peptide sequences, AatrE3.1 geneset.
Anopheles-atroparvus-EBRO_TRANSCRIPTS_AatrE3.1.fa.gz Anopheles atroparvus 9.14 MB Transcripts EBRO strain transcript sequences, AatrE3.1 geneset.
Anopheles-atroparvus-EBRO_BASEFEATURES_AatrE3.1.gff3.gz Anopheles atroparvus 2.12 MB Basefeatures EBRO strain AatrE3.1 geneset in GFF3 format.
Anopheles-atroparvus-EBRO_BASEFEATURES_AatrE3.1.gtf.gz Anopheles atroparvus 1.8 MB Basefeatures EBRO strain AatrE3.1 geneset in GTF (v2.2) format.
Anopheles-atroparvus-EBRO_SCAFFOLD2CHROMOSOME_AatrE3.agp.gz Anopheles atroparvus 219.01 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles atroparvus EBRO strain, AatrE3 assembly.

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