Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 26 - 50 of 718
Double-click species to show assemblies
Operations
 File Organism Size Type Description
Aedes-albopictus-C6-36-cell-line_PEPTIDES_NCBI-101.fa.gz Aedes albopictus 10.18 MB Peptides C6/36 cell line strain peptide sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_PEPTIDES_AaloF1.2.fa.gz Aedes albopictus 5.07 MB Peptides Foshan strain peptide sequences, AaloF1.2 geneset.
Aedes-albopictus-C6-36-cell-line_TRANSCRIPTS_NCBI-101.fa.gz Aedes albopictus 27.04 MB Transcripts C6/36 cell line strain transcript sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_TRANSCRIPTS_AaloF1.2.fa.gz Aedes albopictus 11.57 MB Transcripts Foshan strain transcript sequences, AaloF1.2 geneset.
Aedes-albopictus-C6-36-cell-line_BASEFEATURES_NCBI-101.gff3.gz Aedes albopictus 6.74 MB Basefeatures C6/36 cell line strain NCBI-101 geneset in GFF3 format.
Aedes-albopictus-C6-36-cell-line_BASEFEATURES_NCBI-101.gtf.gz Aedes albopictus 6.25 MB Basefeatures C6/36 cell line strain NCBI-101 geneset in GTF (v2.2) format.
Aedes-albopictus-Foshan_BASEFEATURES_AaloF1.2.gff3.gz Aedes albopictus 5.12 MB Basefeatures Foshan strain AaloF1.2 geneset in GFF3 format.
Aedes-albopictus-Foshan_BASEFEATURES_AaloF1.2.gtf.gz Aedes albopictus 1.98 MB Basefeatures Foshan strain AaloF1.2 geneset in GTF (v2.2) format.
Aedes-albopictus-NIAID_GAPW01.fa.gz Aedes albopictus 1.94 MB Assembled transcriptome TSA:GAPW00000000.1 from reproductive organs
Aedes-albopictus-C6-36-cell-line_CONTIG2SCAFFOLD_GCA_001876365.2.agp.gz Aedes albopictus 21.59 KB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus C6/36 cell line strain, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIG2SCAFFOLD_AaloF1.agp.gz Aedes albopictus 6.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Aedes albopictus Foshan strain, AaloF1 assembly.
Aedes-albopictus-Foshan_MAPPINGS_AaloF1.1-AaloF1.2.txt Aedes albopictus 37.02 KB ID Mapping Stable ID mapping between genesets AaloF1.1 and AaloF1.2 (RNA gene update)
Aedes-albopictus-C6-36-cell-line_REPEATS.lib.gz Aedes albopictus 7.33 MB RepeatMasker library RepeatMasker library file of repeats for Aedes albopictus, C6/36 cell line strain.
Aedes-albopictus-C6-36-cell-line_REPEATFEATURES_GCA_001876365.2.gff3.gz Aedes albopictus 122.65 MB Repeat features C6/36 cell line strain GCA_001876365.2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus-Foshan_REPEATFEATURES_AaloF1.gff3.gz Aedes albopictus 135.86 MB Repeat features Foshan strain AaloF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus_EXPR-STATS_VB-2019-06.txt.gz Aedes albopictus 7.04 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.
Anopheles-albimanus-STECLA_CHROMOSOMES_AalbS2.fa.gz Anopheles albimanus 49.47 MB Chromosomes STECLA strain genomic chromosomes sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_SCAFFOLDS_AalbS2.fa.gz Anopheles albimanus 49.45 MB Scaffolds STECLA strain genomic scaffolds sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_PEPTIDES_AalbS2.6.fa.gz Anopheles albimanus 4.38 MB Peptides STECLA strain peptide sequences, AalbS2.6 geneset.
Anopheles-albimanus-STECLA_TRANSCRIPTS_AalbS2.6.fa.gz Anopheles albimanus 7.79 MB Transcripts STECLA strain transcript sequences, AalbS2.6 geneset.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.6.gff3.gz Anopheles albimanus 1.76 MB Basefeatures STECLA strain AalbS2.6 geneset in GFF3 format.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.6.gtf.gz Anopheles albimanus 1.53 MB Basefeatures STECLA strain AalbS2.6 geneset in GTF (v2.2) format.
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Martinez-2.0.fa.gz Anopheles albimanus 5.02 MB Assembled transcriptome 16699 assembled sequences from combined RNAseq and EST sequencing generated by Martínez-Barnetche et al. (2012)
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Hittinger-1.0.fa.gz Anopheles albimanus 1.49 MB Assembled transcriptome 31295 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-albimanus-STECLA_SCAFFOLD2CHROMOSOME_AalbS2.agp.gz Anopheles albimanus 67.9 KB Scaffold to Chromosome mapping AGP (v2.0) file relating scaffolds to chromosomes for the Anopheles albimanus STECLA strain, AalbS2 assembly.

Pages