Anopheles-merus-MAF_CONTIGS_AmerM2.fa.gz
Anopheles merus
64.91 MB
Contigs
MAF strain genomic contig sequences, AmerM2 assembly.
Anopheles-merus-MAF_SCAFFOLDS_AmerM2.fa.gz
Anopheles merus
65.98 MB
Scaffolds
MAF strain genomic scaffold sequences, AmerM2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-merus-MAF_PEPTIDES_AmerM2.9.fa.gz
Anopheles merus
4.37 MB
Peptides
MAF strain peptide sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_TRANSCRIPTS_AmerM2.9.fa.gz
Anopheles merus
8.61 MB
Transcripts
MAF strain transcript sequences, AmerM2.9 geneset.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gff3.gz
Anopheles merus
2.08 MB
Basefeatures
MAF strain AmerM2.9 geneset in GFF3 format.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.9.gtf.gz
Anopheles merus
1.72 MB
Basefeatures
MAF strain AmerM2.9 geneset in GTF (v2.2) format.
Anopheles-merus-MAF_CONTIG2SCAFFOLD_AmerM2.agp.gz
Anopheles merus
319.99 KB
Contig to Scaffold mapping
AGP (v2.0) file relating contigs to scaffolds for the Anopheles merus MAF1 strain, AmerM2.1 assembly.
Anopheles-merus-MAF_MAPPINGS_AmerM2.2-AmerM2.3.txt
Anopheles merus
9.65 KB
ID Mapping
Stable ID mapping between genesets AmerM2.2 and AmerM2.3 (RNA gene update)
Anopheles-merus-MAF_REPEATS.lib
Anopheles merus
86.2 KB
RepeatMasker library
RepeatMasker library file of repeats for Anopheles merus, MAF strain.
Anopheles-merus-MAF_REPEATFEATURES_AmerM2.gff3.gz
Anopheles merus
5.14 MB
Repeat features
MAF strain AmerM2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_merus_unresolved_transcripts_2015_06.txt
Anopheles merus
1.56 KB
Transcript projection
The stable IDs of unprojected transcripts which fulfill the following criteria,
and thus represented credible genes on the old assembly:
* protein_features > 0
* orthologs...
anopheles_merus_projected_cdna_2015_06.fa
Anopheles merus
25.55 MB
Transcript projection
cDNA sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_cds_2015_06.fa
Anopheles merus
19.88 MB
Transcript projection
Coding sequence (from the old assembly) of projected transcripts.
anopheles_merus_projected_2015_06.gff3
Anopheles merus
9.63 MB
Transcript projection
Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_projected_pep_2015_06.fa
Anopheles merus
6.83 MB
Transcript projection
Peptide sequence (from the old assembly) of projected transcripts.
anopheles_merus_README_2015_06.txt
Anopheles merus
7.37 KB
Transcript projection
In VectorBase release 1506, Anopheles merus genes were projected from
assembly version 1 (GCA_000473845.1) to assembly version 2 (GCA_000473845.2).
This README file describes the...
anopheles_merus_report_2015_06.txt
Anopheles merus
2.29 MB
Transcript projection
Description of the fate of every transcript in the old assembly, along with
statistics to judge the quality and quantity of evidence.
Columns:
* transcript: stable ID
* status:...
anopheles_merus_summary_2015_06.txt
Anopheles merus
474 bytes
Transcript projection
A summary of the number of transcripts that could and could not be projected.
anopheles_merus_unprojected_cdna_2015_06.fa
Anopheles merus
1.24 MB
Transcript projection
cDNA sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_cds_2015_06.fa
Anopheles merus
1.08 MB
Transcript projection
Coding sequence (from the old assembly) of unprojected transcripts.
anopheles_merus_unprojected_2015_06.gff3
Anopheles merus
542.38 KB
Transcript projection
Unrojected (but partially mapped) transcripts (coordinates on the new assembly)
in GFF3 format.
anopheles_merus_unprojected_pep_2015_06.fa
Anopheles merus
388.04 KB
Transcript projection
Peptide sequence (from the old assembly) of unprojected transcripts.
Anopheles-merus_EXPR-STATS_VB-2019-06.txt.gz
Anopheles merus
2.2 MB
Expression statistics
Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.