Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
 File Organism Size Type Description
Aedes-aegypti-LVP_AGWG_CHROMOSOMES_AaegL5.fa.gz Aedes aegypti 389.25 MB Chromosomes LVP_AGWG strain genomic chromosomes sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_CONTIGS_Aag2.fa.gz Aedes aegypti 529.41 MB Contigs Aag2 cell line strain genomic contigs sequences, Aag2 assembly.
Aedes-aegypti-LVP_AGWG_SCAFFOLDS_AaegL5.fa.gz Aedes aegypti 25.1 MB Scaffolds LVP_AGWG strain genomic scaffolds sequences, AaegL5 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-Aag2-cell-line_SCAFFOLDS_Aag2.fa.gz Aedes aegypti 529.44 MB Scaffolds Aag2 cell line strain genomic scaffolds sequences, Aag2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-aegypti-LVP_AGWG_PEPTIDES_AaegL5.2.fa.gz Aedes aegypti 5.64 MB Peptides LVP_AGWG strain peptide sequences, AaegL5.2 geneset.
Aedes-aegypti-LVP_AGWG_TRANSCRIPTS_AaegL5.2.fa.gz Aedes aegypti 18.54 MB Transcripts LVP_AGWG strain transcript sequences, AaegL5.2 geneset.
Aedes-aegypti_EST-CLIPPED_2012-12.fa.gz Aedes aegypti 64.7 MB ESTs Publicly submitted EST/cDNAs as of December 2012 with ends trimmed for poly A|T sequences.
Aedes-aegypti_EST-RAW_2012-12.fa.gz Aedes aegypti 64.87 MB Raw Publicly submitted EST/cDNAs as of December 2012.
Aedes-aegypti-Liverpool_BAC-ENDS_2012-12.fa.gz Aedes aegypti 28.21 MB BAC ends Liverpool strain BAC end sequences from the NCBI trace archive as of December 2012.
Aedes-albopictus-C6-36-cell-line_CONTIGS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Contigs C6/36 cell line strain genomic contigs sequences, GCA_001876365.2 assembly.
Aedes-albopictus-Foshan_CONTIGS_AaloF1.fa.gz Aedes albopictus 516.78 MB Contigs Foshan strain genomic contigs sequences, AaloF1 assembly.
Aedes-albopictus-C6-36-cell-line_SCAFFOLDS_GCA_001876365.2.fa.gz Aedes albopictus 675.21 MB Scaffolds C6/36 cell line strain genomic scaffolds sequences, GCA_001876365.2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Aedes-albopictus-Foshan_SCAFFOLDS_AaloF1.fa.gz Aedes albopictus 518.01 MB Scaffolds Foshan strain genomic scaffolds sequences, AaloF1 assembly (not repeat-masked).
Aedes-albopictus-C6-36-cell-line_PEPTIDES_NCBI-101.fa.gz Aedes albopictus 10.18 MB Peptides C6/36 cell line strain peptide sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_PEPTIDES_AaloF1.2.fa.gz Aedes albopictus 5.07 MB Peptides Foshan strain peptide sequences, AaloF1.2 geneset.
Aedes-albopictus-C6-36-cell-line_TRANSCRIPTS_NCBI-101.fa.gz Aedes albopictus 27.04 MB Transcripts C6/36 cell line strain transcript sequences, NCBI-101 geneset.
Aedes-albopictus-Foshan_TRANSCRIPTS_AaloF1.2.fa.gz Aedes albopictus 11.57 MB Transcripts Foshan strain transcript sequences, AaloF1.2 geneset.
Aedes-albopictus-NIAID_GAPW01.fa.gz Aedes albopictus 1.94 MB Assembled transcriptome TSA:GAPW00000000.1 from reproductive organs
Anopheles-albimanus-STECLA_CHROMOSOMES_AalbS2.fa.gz Anopheles albimanus 49.47 MB Chromosomes STECLA strain genomic chromosomes sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_SCAFFOLDS_AalbS2.fa.gz Anopheles albimanus 49.45 MB Scaffolds STECLA strain genomic scaffolds sequences, AalbS2 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-albimanus-STECLA_PEPTIDES_AalbS2.6.fa.gz Anopheles albimanus 4.38 MB Peptides STECLA strain peptide sequences, AalbS2.6 geneset.
Anopheles-albimanus-STECLA_TRANSCRIPTS_AalbS2.6.fa.gz Anopheles albimanus 7.79 MB Transcripts STECLA strain transcript sequences, AalbS2.6 geneset.
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Martinez-2.0.fa.gz Anopheles albimanus 5.02 MB Assembled transcriptome 16699 assembled sequences from combined RNAseq and EST sequencing generated by Martínez-Barnetche et al. (2012)
Anopheles-albimanus-white-stripe_TRANSCRIPTOME_Hittinger-1.0.fa.gz Anopheles albimanus 1.49 MB Assembled transcriptome 31295 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-aquasalis-NIAID_TSA_GAMD01.fa.gz Anopheles aquasalis 994.96 KB Assembled transcriptome TSA:GAMD00000000.1 from L3, L4 larvae and adult females.
Anopheles-aquasalis-NIAID_TSA-PEPTIDES_GAMD01.fa.gz Anopheles aquasalis 673.23 KB Assembled proteome TSA:GAMD00000000.1 from L3, L4 larvae and adult females, peptide sequences.
Anopheles-arabiensis-Dongola_CONTIGS_AaraD1.fa.gz Anopheles arabiensis 65.1 MB Contigs Dongola strain genomic contig sequences, AaraD1 assembly.
Anopheles-arabiensis-Dongola_SCAFFOLDS_AaraD1.fa.gz Anopheles arabiensis 65.25 MB Scaffolds Dongola strain genomic scaffold sequences, AaraD1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-arabiensis-Dongola_PEPTIDES_AaraD1.11.fa.gz Anopheles arabiensis 4.59 MB Peptides Dongola strain peptide sequences, AaraD1.11 geneset.
Anopheles-arabiensis-Dongola_TRANSCRIPTS_AaraD1.11.fa.gz Anopheles arabiensis 9.82 MB Transcripts Dongola strain transcript sequences, AaraD1.11 geneset.
Anopheles-arabiensis-Hittinger_TRANSCRIPTOME_1.0.fa.gz Anopheles arabiensis 3.04 MB Assembled transcriptome 72049 assembled RNAseq transcripts generated by Hittinger et al. (2010).
Anopheles-atroparvus-EBRO_CHROMOSOMES_AatrE3.fa.gz Anopheles atroparvus 57.24 MB Chromosomes EBRO strain genomic chromosomes sequences, AatrE3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-atroparvus-EBRO_SCAFFOLDS_AatrE3.fa.gz Anopheles atroparvus 57.24 MB Scaffolds EBRO strain genomic scaffolds sequences, AatrE3 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-atroparvus-EBRO_PEPTIDES_AatrE3.1.fa.gz Anopheles atroparvus 4.61 MB Peptides EBRO strain peptide sequences, AatrE3.1 geneset.
Anopheles-atroparvus-EBRO_TRANSCRIPTS_AatrE3.1.fa.gz Anopheles atroparvus 9.14 MB Transcripts EBRO strain transcript sequences, AatrE3.1 geneset.
Anopheles-christyi-ACHKN1017_CONTIGS_AchrA1.fa.gz Anopheles christyi 52.51 MB Contigs ACHKN1017 strain genomic contig sequences, AchrA1 assembly.
Anopheles-christyi-ACHKN1017_SCAFFOLDS_AchrA1.fa.gz Anopheles christyi 52.55 MB Scaffolds ACHKN1017 strain genomic scaffold sequences, AchrA1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-christyi-ACHKN1017_PEPTIDES_AchrA1.7.fa.gz Anopheles christyi 3.78 MB Peptides ACHKN1017 strain peptide sequences, AchrA1.7 geneset.
Anopheles-christyi-ACHKN1017_TRANSCRIPTS_AchrA1.7.fa.gz Anopheles christyi 5.95 MB Transcripts ACHKN1017 strain transcript sequences, AchrA1.7 geneset.
Anopheles-coluzzii-Ngousso_CHROMOSOMES_AcolN1.fa.gz Anopheles coluzzii 76.26 MB Chromosomes Ngousso strain genomic chromosomes sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Mali-NIH_CONTIGS_AcolM1.fa.gz Anopheles coluzzii 62.26 MB Contigs Mali-NIH strain genomic contigs sequences, AcolM1 assembly.
Anopheles-coluzzii-Ngousso_SCAFFOLDS_AcolN1.fa.gz Anopheles coluzzii 76.25 MB Scaffolds Ngousso strain genomic scaffolds sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Mali-NIH_SCAFFOLDS_AcolM1.fa.gz Anopheles coluzzii 65.08 MB Scaffolds Mali-NIH strain genomic scaffold sequences, AcolM1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-coluzzii-Ngousso_PEPTIDES_AcolN1.0.fa.gz Anopheles coluzzii 4.51 MB Peptides Ngousso strain peptide sequences, AcolN1.0 geneset.
Anopheles-coluzzii-Mali-NIH_PEPTIDES_AcolM1.8.fa.gz Anopheles coluzzii 4.28 MB Peptides Mali-NIH strain peptide sequences, AcolM1.8 geneset.
Anopheles-coluzzii-Ngousso_TRANSCRIPTS_AcolN1.0.fa.gz Anopheles coluzzii 6.97 MB Transcripts Ngousso strain transcript sequences, AcolN1.0 geneset.
Anopheles-coluzzii-Mali-NIH_TRANSCRIPTS_AcolM1.8.fa.gz Anopheles coluzzii 8.8 MB Transcripts Mali-NIH strain transcript sequences, AcolM1.8 geneset.
Anopheles-coluzzii-Mali-NIH_BAC-ENDS_Dec12.fa.gz Anopheles coluzzii 45.63 MB BAC ends Mali-NIH strain BAC end sequences from the NCBI trace archive as of December 2012.
Anopheles-coluzzii-Ngousso_NONREFSCAFFOLDS_AcolN1.fa.gz Anopheles coluzzii 26.96 MB Ngousso strain genomic nonrefscaffolds sequences, AcolN1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Anopheles-culicifacies-A-37_CONTIGS_AculA1.fa.gz Anopheles culicifacies A 56.31 MB Contigs A-37 strain genome contig sequences, AculA1 assembly.

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